STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
mms67Trypsin-like serine protease; Typically periplasmic, contain C-terminal PDZ domain; Belongs to the peptidase S1C family. (503 aa)    
Predicted Functional Partners:
amb3490
Membrane protease subunits, stomatin/prohibitin homolog; HflC and HflK could regulate a protease.
 
 
 0.727
amb3489
Membrane protease subunits, stomatin/prohibitin homolog; HflC and HflK could encode or regulate a protease.
 
 
 0.719
amb0602
Outer membrane protein and related peptidoglycan-associated protein.
   
 
 0.654
amb3878
Sensor protein gacS.
  
  
 0.565
amb3491
Uncharacterized protein conserved in bacteria.
       0.553
amb4261
Ribosomal protein S1; Binds mRNA; thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence.
 
    0.522
truA
Pseudouridylate synthase; Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs.
 
    0.477
amb2491
Predicted membrane-associated Zn-dependent protease 1.
 
  
 0.454
amb1695
Ankyrin repeat.
  
 0.439
amb2494
Undecaprenyl pyrophosphate synthase; Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids.
 
     0.432
Your Current Organism:
Magnetospirillum magneticum
NCBI taxonomy Id: 342108
Other names: M. magneticum AMB-1, Magnetospirillum magneticum AMB-1, Magnetospirillum magneticum str. AMB-1, Magnetospirillum magneticum strain AMB-1, Magnetospirillum sp. (strain AMB-1), Magnetospirillum sp. AMB-1
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