STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
amb3523Permease of the major facilitator superfamily. (699 aa)    
Predicted Functional Partners:
amb3522
ABC-type uncharacterized transport system, periplasmic component.
 
   
 0.956
amb3520
Serine phosphatase RsbU, regulator of sigma subunit.
 
   
 0.853
amb3521
Methionyl-tRNA formyltransferase.
 
   
 0.804
amb3519
Anti-anti-sigma regulatory factor; Belongs to the anti-sigma-factor antagonist family.
 
     0.802
amb3524
Hypothetical protein.
       0.779
amb3525
Hypothetical protein.
       0.779
amb1112
Signal transduction histidine kinase.
   
 
 0.749
amb1110
Signal transduction histidine kinase.
   
 
 0.640
amb2936
Predicted ATPase.
 
   
 0.637
amb1947
Predicted ATPase.
 
   
 0.636
Your Current Organism:
Magnetospirillum magneticum
NCBI taxonomy Id: 342108
Other names: M. magneticum AMB-1, Magnetospirillum magneticum AMB-1, Magnetospirillum magneticum str. AMB-1, Magnetospirillum magneticum strain AMB-1, Magnetospirillum sp. (strain AMB-1), Magnetospirillum sp. AMB-1
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