Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
amb3524Hypothetical protein. (138 aa)    
Predicted Functional Partners:
amb3525
Hypothetical protein.
      0.969
amb3522
ABC-type uncharacterized transport system, periplasmic component.
       0.782
amb3523
Permease of the major facilitator superfamily.
       0.779
amb3520
Serine phosphatase RsbU, regulator of sigma subunit.
       0.739
amb3521
Methionyl-tRNA formyltransferase.
       0.732
amb3519
Anti-anti-sigma regulatory factor; Belongs to the anti-sigma-factor antagonist family.
       0.707
murI
Glutamate racemase; Provides the (R)-glutamate required for cell wall biosynthesis.
       0.537
amb3518
Hypothetical protein.
       0.502
amb3527
Glycosyltransferase.
       0.404
Your Current Organism:
Magnetospirillum magneticum
NCBI taxonomy Id: 342108
Other names: M. magneticum AMB-1, Magnetospirillum magneticum AMB-1, Magnetospirillum magneticum str. AMB-1, Magnetospirillum magneticum strain AMB-1, Magnetospirillum sp. (strain AMB-1), Magnetospirillum sp. AMB-1
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