STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
amb3537Serine phosphatase RsbU, regulator of sigma subunit. (421 aa)    
Predicted Functional Partners:
amb1110
Signal transduction histidine kinase.
 
 
 0.973
amb3538
Hypothetical protein.
 
 
 0.967
amb3438
Sensor protein gacS.
 
 
 0.933
amb0334
Serine phosphatase RsbU; Regulator of sigma subunit.
 
 
0.929
amb1841
Hypothetical protein.
  
 
 0.922
amb4146
Signal transduction histidine kinase.
  
 
 0.922
amb2293
Signal transduction histidine kinase.
 
 
 0.912
amb1432
Signal transduction histidine kinase.
  
 
0.887
amb1281
Predicted signal transduction protein containing a membrane domain; EAL and a GGDEF domain.
 
 
 0.884
amb3520
Serine phosphatase RsbU, regulator of sigma subunit.
 
 
0.884
Your Current Organism:
Magnetospirillum magneticum
NCBI taxonomy Id: 342108
Other names: M. magneticum AMB-1, Magnetospirillum magneticum AMB-1, Magnetospirillum magneticum str. AMB-1, Magnetospirillum magneticum strain AMB-1, Magnetospirillum sp. (strain AMB-1), Magnetospirillum sp. AMB-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.