Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
amb3537Serine phosphatase RsbU, regulator of sigma subunit. (421 aa)    
Predicted Functional Partners:
amb1110
Signal transduction histidine kinase.
  
 
 0.973
amb3538
Hypothetical protein.
 
 
 0.964
amb0334
Serine phosphatase RsbU; Regulator of sigma subunit.
 
 
0.939
amb3438
Sensor protein gacS.
 
 
 0.926
amb1841
Hypothetical protein.
  
 
 0.914
amb4146
Signal transduction histidine kinase.
  
 
 0.914
amb2293
Signal transduction histidine kinase.
 
 
 0.910
amb3520
Serine phosphatase RsbU, regulator of sigma subunit.
 
 
0.892
amb1432
Signal transduction histidine kinase.
  
 
 0.890
amb1281
Predicted signal transduction protein containing a membrane domain; EAL and a GGDEF domain.
  
 
 0.878
Your Current Organism:
Magnetospirillum magneticum
NCBI taxonomy Id: 342108
Other names: M. magneticum AMB-1, Magnetospirillum magneticum AMB-1, Magnetospirillum magneticum str. AMB-1, Magnetospirillum magneticum strain AMB-1, Magnetospirillum sp. (strain AMB-1), Magnetospirillum sp. AMB-1
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