Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
amb3549Periplasmic protein TonB, links inner and outer membranes. (221 aa)    
Predicted Functional Partners:
amb3550
Biopolymer transport protein.
 
 
 0.990
amb3551
Biopolymer transport protein.
 
 
 0.989
amb3552
Biopolymer transport protein.
 
 
 0.989
amb3547
Outer membrane receptor protein; Mostly Fe transport.
 
 
 0.979
amb3213
Biopolymer transport protein.
  
 
 0.860
tolQ
Biopolymer transport protein; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity.
  
 
 0.840
amb3548
Hypothetical protein.
 
   
 0.820
amb0540
Outer membrane receptor protein; Mostly Fe transport.
  
 
 0.801
amb0846
Outer membrane receptor protein; Mostly Fe transport.
  
 
 0.801
amb0602
Outer membrane protein and related peptidoglycan-associated protein.
 
 
 0.656
Your Current Organism:
Magnetospirillum magneticum
NCBI taxonomy Id: 342108
Other names: M. magneticum AMB-1, Magnetospirillum magneticum AMB-1, Magnetospirillum magneticum str. AMB-1, Magnetospirillum magneticum strain AMB-1, Magnetospirillum sp. (strain AMB-1), Magnetospirillum sp. AMB-1
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