STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
amb3563C4-dicarboxylate transport sensor protein dctB. (560 aa)    
Predicted Functional Partners:
amb3312
PvrR.
  
 0.976
amb4099
FOG: EAL domain.
 
  
 0.974
amb3093
Predicted signal transduction protein containing a membrane domain; EAL and a GGDEF domain.
 
 0.966
amb2166
PvrR.
    0.955
amb3300
Predicted signal transduction protein containing sensor and EAL domains.
  
 0.912
amb1669
Predicted signal transduction protein containing sensor and EAL domains.
 
  
 0.827
amb1414
Predicted signal transduction protein containing a membrane domain; EAL and a GGDEF domain.
 
 
 0.825
amb0770
EAL domain.
 
 
 0.809
amb1853
EAL domain.
 
  
 0.807
amb0915
EAL domain.
  
 0.785
Your Current Organism:
Magnetospirillum magneticum
NCBI taxonomy Id: 342108
Other names: M. magneticum AMB-1, Magnetospirillum magneticum AMB-1, Magnetospirillum magneticum str. AMB-1, Magnetospirillum magneticum strain AMB-1, Magnetospirillum sp. (strain AMB-1), Magnetospirillum sp. AMB-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.