STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
amb3580Hypothetical 77 kDa protein in fixX 3'region. (65 aa)    
Predicted Functional Partners:
amb1561
Nitrogenase stabilizing/protective protein nifW.
 
  
 0.838
amb1566
Hypothetical 175 kDa protein in nifX 3'region.
 
  
 0.836
amb1567
NifX protein.
 
  
 0.810
amb1565
Ferredoxin.
 
    0.805
amb1581
Protein fixU homolog.
 
  
 0.796
amb1580
Hypothetical protein.
  
    0.791
amb0600
Hypothetical 198 kDa protein in nifW 5'region.
 
   
 0.782
amb1582
Putative nifZ protein.
  
    0.778
amb2952
NifX protein.
 
  
 0.771
amb4143
Hypothetical protein.
  
    0.771
Your Current Organism:
Magnetospirillum magneticum
NCBI taxonomy Id: 342108
Other names: M. magneticum AMB-1, Magnetospirillum magneticum AMB-1, Magnetospirillum magneticum str. AMB-1, Magnetospirillum magneticum strain AMB-1, Magnetospirillum sp. (strain AMB-1), Magnetospirillum sp. AMB-1
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.