STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
amb3585Transcriptional regulator. (219 aa)    
Predicted Functional Partners:
amb3584
Acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II.
 
   
 0.807
amb1553
Transcriptional regulator.
 
  
 0.794
ispE
4-diphosphocytidyl-2C-methyl-D-erythritol 2-phosphate synthase; Catalyzes the phosphorylation of the position 2 hydroxy group of 4-diphosphocytidyl-2C-methyl-D-erythritol.
    
 0.534
amb3586
Acyl-CoA dehydrogenase.
     
 0.524
amb3587
3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenase.
  
  
 0.501
amb3583
Enoyl-CoA hydratase/carnithine racemase.
  
  
 0.494
amb3508
Acetolactate synthase; Small (regulatory) subunit.
   
    0.441
amb0238
Transcriptional regulator.
 
  
0.410
amb0422
TRAP-type C4-dicarboxylate transport system, periplasmic component.
 
     0.404
Your Current Organism:
Magnetospirillum magneticum
NCBI taxonomy Id: 342108
Other names: M. magneticum AMB-1, Magnetospirillum magneticum AMB-1, Magnetospirillum magneticum str. AMB-1, Magnetospirillum magneticum strain AMB-1, Magnetospirillum sp. (strain AMB-1), Magnetospirillum sp. AMB-1
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