STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
amb3589Long-chain acyl-CoA synthetase. (643 aa)    
Predicted Functional Partners:
amb3588
ABC-type branched-chain amino acid transport systems, ATPase component.
 
    0.969
amb3590
Branched-chain amino acid ABC-type transport system, permease components; Belongs to the binding-protein-dependent transport system permease family.
 
    0.956
amb2600
Acyl-CoA synthetase/AMP-acid ligase II.
 
 
0.922
amb3591
ABC-type branched-chain amino acid transport system, permease component; Belongs to the binding-protein-dependent transport system permease family.
 
    0.901
amb3592
ABC-type branched-chain amino acid transport systems, periplasmic component.
 
    0.874
amb3593
ABC-type branched-chain amino acid transport systems, ATPase component.
    0.853
amb3594
Coenzyme F390 synthetase.
 
    0.829
amb3586
Acyl-CoA dehydrogenase.
  
 0.791
amb0308
Acyl-CoA dehydrogenase.
  
 0.682
amb2024
Acyl-CoA dehydrogenase.
  
 0.682
Your Current Organism:
Magnetospirillum magneticum
NCBI taxonomy Id: 342108
Other names: M. magneticum AMB-1, Magnetospirillum magneticum AMB-1, Magnetospirillum magneticum str. AMB-1, Magnetospirillum magneticum strain AMB-1, Magnetospirillum sp. (strain AMB-1), Magnetospirillum sp. AMB-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.