STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
amb3589Long-chain acyl-CoA synthetase. (643 aa)    
Predicted Functional Partners:
amb3588
ABC-type branched-chain amino acid transport systems, ATPase component.
    0.968
amb3590
Branched-chain amino acid ABC-type transport system, permease components; Belongs to the binding-protein-dependent transport system permease family.
 
    0.954
amb2600
Acyl-CoA synthetase/AMP-acid ligase II.
 
0.918
amb3591
ABC-type branched-chain amino acid transport system, permease component; Belongs to the binding-protein-dependent transport system permease family.
 
    0.898
amb3592
ABC-type branched-chain amino acid transport systems, periplasmic component.
 
    0.883
amb3593
ABC-type branched-chain amino acid transport systems, ATPase component.
    0.851
amb3594
Coenzyme F390 synthetase.
 
    0.827
amb4214
Lysophospholipase.
    
 0.813
amb3586
Acyl-CoA dehydrogenase.
  
 0.801
amb1949
Phenolpthiocerol synthesis polyketide synthase ppsA.
   
 
 0.756
Your Current Organism:
Magnetospirillum magneticum
NCBI taxonomy Id: 342108
Other names: M. magneticum AMB-1, Magnetospirillum magneticum AMB-1, Magnetospirillum magneticum str. AMB-1, Magnetospirillum magneticum strain AMB-1, Magnetospirillum sp. (strain AMB-1), Magnetospirillum sp. AMB-1
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