Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
amb3600Universal stress protein UspA and related nucleotide-binding protein. (271 aa)    
Predicted Functional Partners:
amb3598
Acetyl-CoA acetyltransferase; Belongs to the thiolase-like superfamily. Thiolase family.
     
 0.747
amb3599
Acyl-CoA dehydrogenase.
       0.746
amb3596
Uncharacterized conserved protein.
       0.551
amb3597
Predicted nucleotidyltransferase.
       0.551
amb3710
Histone acetyltransferase HPA2 and related acetyltransferase.
 
    0.534
amb3601
Uncharacterized protein, possibly involved in aromatic compounds catabolism.
       0.495
amb3828
Hypothetical protein; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella.
  
   
 0.456
amb4556
Methylated DNA-protein cysteine methyltransferase; Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction: the enzyme is irreversibly inactivated.
  
  
 0.449
amb3861
Hypothetical protein.
 
  
 0.410
amb4342
Hypothetical protein.
   
  
 0.405
Your Current Organism:
Magnetospirillum magneticum
NCBI taxonomy Id: 342108
Other names: M. magneticum AMB-1, Magnetospirillum magneticum AMB-1, Magnetospirillum magneticum str. AMB-1, Magnetospirillum magneticum strain AMB-1, Magnetospirillum sp. (strain AMB-1), Magnetospirillum sp. AMB-1
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