STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
amb3602FOG: GGDEF domain. (598 aa)    
Predicted Functional Partners:
amb1110
Signal transduction histidine kinase.
  
 
 0.932
amb3093
Predicted signal transduction protein containing a membrane domain; EAL and a GGDEF domain.
 
 
 0.923
amb2293
Signal transduction histidine kinase.
  
 
 0.900
amb3312
PvrR.
 
 0.897
amb1841
Hypothetical protein.
  
 
 0.895
amb3438
Sensor protein gacS.
  
 
 0.895
amb4146
Signal transduction histidine kinase.
  
 
 0.895
amb1839
Response regulator containing a CheY-like receiver domain and an HD-GYP domain.
    0.893
amb1432
Signal transduction histidine kinase.
  
 
 0.876
amb1281
Predicted signal transduction protein containing a membrane domain; EAL and a GGDEF domain.
 
 
0.869
Your Current Organism:
Magnetospirillum magneticum
NCBI taxonomy Id: 342108
Other names: M. magneticum AMB-1, Magnetospirillum magneticum AMB-1, Magnetospirillum magneticum str. AMB-1, Magnetospirillum magneticum strain AMB-1, Magnetospirillum sp. (strain AMB-1), Magnetospirillum sp. AMB-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.