Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 annotation | node2 annotation | score |
amb0685 | amb3625 | Uncharacterized protein; Conserved in bacteria. | Methyl-accepting chemotaxis protein; HD-GYP domain. | 0.400 |
amb2235 | amb3039 | Adenylate cyclase; Family 3. | Hypothetical protein. | 0.490 |
amb2235 | amb3299 | Adenylate cyclase; Family 3. | RTX toxins and related Ca2+-binding protein. | 0.550 |
amb2235 | amb3571 | Adenylate cyclase; Family 3. | Hypothetical protein. | 0.612 |
amb2235 | amb3625 | Adenylate cyclase; Family 3. | Methyl-accepting chemotaxis protein; HD-GYP domain. | 0.632 |
amb3039 | amb2235 | Hypothetical protein. | Adenylate cyclase; Family 3. | 0.490 |
amb3039 | amb3623 | Hypothetical protein. | ABC-type multidrug transport system, ATPase component. | 0.477 |
amb3039 | amb3624 | Hypothetical protein. | ABC-type multidrug transport system, permease component. | 0.452 |
amb3039 | amb3625 | Hypothetical protein. | Methyl-accepting chemotaxis protein; HD-GYP domain. | 0.427 |
amb3039 | amb4060 | Hypothetical protein. | Adenylate cyclase; Family 3. | 0.402 |
amb3299 | amb2235 | RTX toxins and related Ca2+-binding protein. | Adenylate cyclase; Family 3. | 0.550 |
amb3299 | amb3625 | RTX toxins and related Ca2+-binding protein. | Methyl-accepting chemotaxis protein; HD-GYP domain. | 0.400 |
amb3571 | amb2235 | Hypothetical protein. | Adenylate cyclase; Family 3. | 0.612 |
amb3571 | amb3625 | Hypothetical protein. | Methyl-accepting chemotaxis protein; HD-GYP domain. | 0.476 |
amb3621 | amb3623 | Anthranilate phosphoribosyltransferase. | ABC-type multidrug transport system, ATPase component. | 0.600 |
amb3621 | amb3624 | Anthranilate phosphoribosyltransferase. | ABC-type multidrug transport system, permease component. | 0.643 |
amb3621 | amb3625 | Anthranilate phosphoribosyltransferase. | Methyl-accepting chemotaxis protein; HD-GYP domain. | 0.454 |
amb3623 | amb3039 | ABC-type multidrug transport system, ATPase component. | Hypothetical protein. | 0.477 |
amb3623 | amb3621 | ABC-type multidrug transport system, ATPase component. | Anthranilate phosphoribosyltransferase. | 0.600 |
amb3623 | amb3624 | ABC-type multidrug transport system, ATPase component. | ABC-type multidrug transport system, permease component. | 0.978 |
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