Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
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[Homology]
Score
amb3625Methyl-accepting chemotaxis protein; HD-GYP domain. (989 aa)    
Predicted Functional Partners:
amb2235
Adenylate cyclase; Family 3.
 
     0.631
amb3624
ABC-type multidrug transport system, permease component.
 
    0.516
amb4060
Adenylate cyclase; Family 3.
 
     0.501
amb3571
Hypothetical protein.
 
     0.477
amb3955
Exopolyphosphatase-related protein.
  
   
 0.477
amb3623
ABC-type multidrug transport system, ATPase component.
       0.454
amb3621
Anthranilate phosphoribosyltransferase.
 
     0.453
amb3039
Hypothetical protein.
 
     0.427
amb3299
RTX toxins and related Ca2+-binding protein.
 
     0.401
amb0685
Uncharacterized protein; Conserved in bacteria.
  
    0.400
Your Current Organism:
Magnetospirillum magneticum
NCBI taxonomy Id: 342108
Other names: M. magneticum AMB-1, Magnetospirillum magneticum AMB-1, Magnetospirillum magneticum str. AMB-1, Magnetospirillum magneticum strain AMB-1, Magnetospirillum sp. (strain AMB-1), Magnetospirillum sp. AMB-1
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