STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
amb3651Aconitase A; Catalyzes the isomerization of citrate to isocitrate via cis- aconitate. (903 aa)    
Predicted Functional Partners:
amb2804
Citrate synthase; Belongs to the citrate synthase family.
 
 0.996
amb0608
Isocitrate dehydrogenase; Belongs to the isocitrate and isopropylmalate dehydrogenases family.
  
 0.991
amb4400
Aconitase B; Belongs to the aconitase/IPM isomerase family.
    
 0.964
amb0607
Monomeric isocitrate dehydrogenase; Belongs to the monomeric-type IDH family.
 
 
 0.953
amb2511
Superoxide dismutase; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family.
   
 
 0.935
fumC
Fumarase; Involved in the TCA cycle. Catalyzes the stereospecific interconversion of fumarate to L-malate; Belongs to the class-II fumarase/aspartase family. Fumarase subfamily.
  
 
 0.863
amb3953
Succinate dehydrogenase/fumarate reductase, Fe-S protein subunit; Msp2.
  
 
 0.859
amb0250
Uncharacterized protein; Conserved in bacteria.
  
  
 0.844
amb0321
Ribosomal protein L28.
   
   0.823
rpmF
Ribosomal protein L32; Belongs to the bacterial ribosomal protein bL32 family.
   
   0.812
Your Current Organism:
Magnetospirillum magneticum
NCBI taxonomy Id: 342108
Other names: M. magneticum AMB-1, Magnetospirillum magneticum AMB-1, Magnetospirillum magneticum str. AMB-1, Magnetospirillum magneticum strain AMB-1, Magnetospirillum sp. (strain AMB-1), Magnetospirillum sp. AMB-1
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