STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
amb3678Predicted NTPase; NACHT family. (531 aa)    
Predicted Functional Partners:
amb3679
Hypothetical protein.
      0.976
cobB
NAD-dependent protein deacetylase; SIR2 family; Belongs to the sirtuin family. Class III subfamily.
   
   0.800
amb3766
Hypothetical 1337 kDa protein Y4CA.
   
   0.800
amb3409
FOG: TPR repeat.
 
     0.704
amb0236
Hypothetical protein.
 
     0.685
amb0235
Hypothetical protein.
 
     0.677
amb0757
TPR repeat.
  
     0.623
amb2931
Methyl-accepting chemotaxis protein.
  
     0.565
amb1949
Phenolpthiocerol synthesis polyketide synthase ppsA.
  
     0.557
amb3677
Hypothetical protein.
       0.532
Your Current Organism:
Magnetospirillum magneticum
NCBI taxonomy Id: 342108
Other names: M. magneticum AMB-1, Magnetospirillum magneticum AMB-1, Magnetospirillum magneticum str. AMB-1, Magnetospirillum magneticum strain AMB-1, Magnetospirillum sp. (strain AMB-1), Magnetospirillum sp. AMB-1
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