STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
amb3698Uncharacterized flavoprotein. (288 aa)    
Predicted Functional Partners:
amb3699
FOG: GGDEF domain.
      0.769
amb3697
FOG: CheY-like receiver.
  
    0.716
amb2698
Coproporphyrinogen III oxidase and related Fe-S oxidoreductase; Belongs to the anaerobic coproporphyrinogen-III oxidase family.
   
  
 0.580
amb3700
FOG: PAS/PAC domain.
       0.580
amb3701
Methyl-accepting chemotaxis protein.
       0.572
amb1682
Hypothetical protein.
  
  
 0.501
amb3095
Hypothetical protein.
  
  
 0.446
amb3702
Hypothetical protein.
       0.439
amb3576
Hypothetical protein.
   
  
 0.416
amb0569
Hemerythrin-like protein RSc0777.
   
    0.403
Your Current Organism:
Magnetospirillum magneticum
NCBI taxonomy Id: 342108
Other names: M. magneticum AMB-1, Magnetospirillum magneticum AMB-1, Magnetospirillum magneticum str. AMB-1, Magnetospirillum magneticum strain AMB-1, Magnetospirillum sp. (strain AMB-1), Magnetospirillum sp. AMB-1
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