Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| amb0017 | amb3714 | amb0017 | amb3714 | Outer membrane lipoprotein-sorting protein; Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane). | Predicted permease. | 0.529 |
| amb0017 | amb3716 | amb0017 | amb3716 | Outer membrane lipoprotein-sorting protein; Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane). | Parvulin-like peptidyl-prolyl isomerase. | 0.441 |
| amb0017 | amb3906 | amb0017 | amb3906 | Outer membrane lipoprotein-sorting protein; Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane). | Predicted permease. | 0.549 |
| amb0017 | amb3934 | amb0017 | amb3934 | Outer membrane lipoprotein-sorting protein; Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane). | Uncharacterized protein conserved in bacteria. | 0.532 |
| amb0017 | amb3935 | amb0017 | amb3935 | Outer membrane lipoprotein-sorting protein; Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane). | Uncharacterized protein conserved in bacteria. | 0.607 |
| amb0017 | bamA | amb0017 | amb2490 | Outer membrane lipoprotein-sorting protein; Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane). | Outer membrane protein/protective antigen OMA87; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane. | 0.671 |
| amb0017 | lptD | amb0017 | amb3715 | Outer membrane lipoprotein-sorting protein; Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane). | Organic solvent tolerance protein OstA; Involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane; Belongs to the LptD family. | 0.723 |
| amb3714 | amb0017 | amb3714 | amb0017 | Predicted permease. | Outer membrane lipoprotein-sorting protein; Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane). | 0.529 |
| amb3714 | amb3716 | amb3714 | amb3716 | Predicted permease. | Parvulin-like peptidyl-prolyl isomerase. | 0.902 |
| amb3714 | amb3906 | amb3714 | amb3906 | Predicted permease. | Predicted permease. | 0.998 |
| amb3714 | amb3934 | amb3714 | amb3934 | Predicted permease. | Uncharacterized protein conserved in bacteria. | 0.590 |
| amb3714 | amb3935 | amb3714 | amb3935 | Predicted permease. | Uncharacterized protein conserved in bacteria. | 0.746 |
| amb3714 | bamA | amb3714 | amb2490 | Predicted permease. | Outer membrane protein/protective antigen OMA87; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane. | 0.478 |
| amb3714 | lptD | amb3714 | amb3715 | Predicted permease. | Organic solvent tolerance protein OstA; Involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane; Belongs to the LptD family. | 0.968 |
| amb3714 | pdxA | amb3714 | amb3717 | Predicted permease. | Pyridoxal phosphate biosynthesis protein; Catalyzes the NAD(P)-dependent oxidation of 4-(phosphooxy)-L- threonine (HTP) into 2-amino-3-oxo-4-(phosphooxy)butyric acid which spontaneously decarboxylates to form 3-amino-2-oxopropyl phosphate (AHAP). | 0.756 |
| amb3714 | rsmA | amb3714 | amb3718 | Predicted permease. | Dimethyladenosine transferase; Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits. | 0.797 |
| amb3716 | amb0017 | amb3716 | amb0017 | Parvulin-like peptidyl-prolyl isomerase. | Outer membrane lipoprotein-sorting protein; Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane). | 0.441 |
| amb3716 | amb3714 | amb3716 | amb3714 | Parvulin-like peptidyl-prolyl isomerase. | Predicted permease. | 0.902 |
| amb3716 | amb3906 | amb3716 | amb3906 | Parvulin-like peptidyl-prolyl isomerase. | Predicted permease. | 0.470 |
| amb3716 | amb3934 | amb3716 | amb3934 | Parvulin-like peptidyl-prolyl isomerase. | Uncharacterized protein conserved in bacteria. | 0.666 |
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