STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
amb3725Poly(3-hydroxyalkanoate) synthetase. (598 aa)    
Predicted Functional Partners:
amb0843
Dehydrogenase with different specificities; phbB homolog.
 
 
 0.978
amb0518
Poly-beta-hydroxyalkanoate depolymerase.
 
  
 0.973
amb0831
Acyl dehydratase.
 
  
 0.935
amb0841
Poly-beta-hydroxybutyrate polymerase; phbC homolog.
  
  
 
0.929
amb2556
Phosphotransacetylase.
  
 0.885
amb0839
Uncharacterized protein; Conserved in bacteria.
 
   
 0.809
ackA
Acetate kinase; Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction; Belongs to the acetokinase family.
  
 0.715
amb3634
Predicted esterase of the alpha-beta hydrolase superfamily.
 
   
 0.607
amb0680
Predicted esterase of the alpha-beta hydrolase superfamily.
 
   
 0.587
amb3726
Hypothetical protein.
       0.479
Your Current Organism:
Magnetospirillum magneticum
NCBI taxonomy Id: 342108
Other names: M. magneticum AMB-1, Magnetospirillum magneticum AMB-1, Magnetospirillum magneticum str. AMB-1, Magnetospirillum magneticum strain AMB-1, Magnetospirillum sp. (strain AMB-1), Magnetospirillum sp. AMB-1
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