Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
amb3727Aspartate/tyrosine/aromatic aminotransferase. (410 aa)    
Predicted Functional Partners:
amb3728
Homoserine dehydrogenase.
 
 
 0.898
amb3729
Fructose-1,6-bisphosphatase/sedoheptulose 1,7-bisphosphatase and related protein; Belongs to the FBPase class 2 family.
       0.818
amb3730
Single-stranded DNA-specific exonuclease.
       0.810
amb0521
Glutamate synthase [NADPH] large chain precursor.
     
 0.563
lysA
Diaminopimelate decarboxylase; Specifically catalyzes the decarboxylation of meso- diaminopimelate (meso-DAP) to L-lysine.
 
  
 0.510
amb3726
Hypothetical protein.
       0.501
amb0289
NADP-dependent malic enzyme.
  
 
 0.436
amb0720
NADP-dependent malic enzyme.
  
 
 0.436
asd
Aspartate-semialdehyde dehydrogenase; Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L-aspartyl- 4-phosphate; Belongs to the aspartate-semialdehyde dehydrogenase family.
 
 
 0.406
Your Current Organism:
Magnetospirillum magneticum
NCBI taxonomy Id: 342108
Other names: M. magneticum AMB-1, Magnetospirillum magneticum AMB-1, Magnetospirillum magneticum str. AMB-1, Magnetospirillum magneticum strain AMB-1, Magnetospirillum sp. (strain AMB-1), Magnetospirillum sp. AMB-1
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