Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
amb3749Hypothetical protein. (150 aa)    
Predicted Functional Partners:
amb3740
Flp pilus assembly protein CpaB.
 
  
 0.920
amb3743
Flp pilus assembly protein, ATPase CpaE.
 
  
 0.918
amb3752
Flp pilus assembly protein TadG.
 
  
 0.901
amb3748
Flp pilus assembly protein TadD; TPR repeats.
 
 
 0.899
amb3751
Flp pilus assembly protein TadG.
 
  
 0.896
amb3750
Flp pilus assembly protein TadG.
 
  
 0.890
amb3739
Flp pilus assembly protein, protease CpaA.
 
  
 0.866
amb3746
Flp pilus assembly protein TadC.
 
  
 0.765
amb3744
Flp pilus assembly protein, ATPase CpaF.
 
  
 0.751
amb3745
Flp pilus assembly protein TadB.
 
  
 0.742
Your Current Organism:
Magnetospirillum magneticum
NCBI taxonomy Id: 342108
Other names: M. magneticum AMB-1, Magnetospirillum magneticum AMB-1, Magnetospirillum magneticum str. AMB-1, Magnetospirillum magneticum strain AMB-1, Magnetospirillum sp. (strain AMB-1), Magnetospirillum sp. AMB-1
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