STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
amb3810Predicted O-linked N-acetylglucosamine transferase; SPINDLY family. (591 aa)    
Predicted Functional Partners:
amb0795
2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1, 4-benzoquinol methylase.
      0.875
amb2136
TPR repeat.
 
 0.862
amb3060
FOG: TPR repeat.
 
 0.764
amb2653
Uncharacterized protein; Conserved in bacteria.
     0.757
amb2156
Hypothetical protein.
 
 0.707
amb3871
FOG: TPR repeat.
   
 0.697
amb0708
Predicted O-linked N-acetylglucosamine transferase; SPINDLY family.
 
0.655
amb0435
Ice nucleation protein.
 
     0.639
amb0024
TPR repeat protein.
     0.619
amb1269
Mucin 4.
 
     0.610
Your Current Organism:
Magnetospirillum magneticum
NCBI taxonomy Id: 342108
Other names: M. magneticum AMB-1, Magnetospirillum magneticum AMB-1, Magnetospirillum magneticum str. AMB-1, Magnetospirillum magneticum strain AMB-1, Magnetospirillum sp. (strain AMB-1), Magnetospirillum sp. AMB-1
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