STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
amb3811Hypothetical protein. (114 aa)    
Predicted Functional Partners:
amb0334
Serine phosphatase RsbU; Regulator of sigma subunit.
   
    0.822
amb3520
Serine phosphatase RsbU, regulator of sigma subunit.
   
    0.822
amb3829
FlbT protein.
  
  
 0.788
amb0684
Flagellin and related hook-associated protein; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella.
  
  
 0.777
amb3827
Flagellar hook-associated protein; Belongs to the flagella basal body rod proteins family.
  
  
 0.695
amb0502
Flagellar motor switch protein; FliG is one of three proteins (FliG, FliN, FliM) that forms the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation.
   
  
 0.644
amb1110
Signal transduction histidine kinase.
   
    0.634
amb1281
Predicted signal transduction protein containing a membrane domain; EAL and a GGDEF domain.
   
    0.614
amb3740
Flp pilus assembly protein CpaB.
   
    0.580
amb0614
Flagellar basal body protein; Structural component of flagellum, the bacterial motility apparatus. Part of the rod structure of flagellar basal body.
  
  
 0.577
Your Current Organism:
Magnetospirillum magneticum
NCBI taxonomy Id: 342108
Other names: M. magneticum AMB-1, Magnetospirillum magneticum AMB-1, Magnetospirillum magneticum str. AMB-1, Magnetospirillum magneticum strain AMB-1, Magnetospirillum sp. (strain AMB-1), Magnetospirillum sp. AMB-1
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