Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
amb3836Hypothetical protein. (243 aa)    
Predicted Functional Partners:
amb0326
Chemotaxis protein histidine kinase and related kinase.
 
 
 0.981
amb3004
Gliding motility regulatory protein.
  
 
 0.941
amb3502
Chemotaxis protein.
  
  
 
0.919
amb4110
Hypothetical protein.
  
  
 
0.911
amb3329
Hypothetical 1041 kDa protein in hypE 3'region.
  
 
 0.900
amb2932
Methylase of chemotaxis methyl-accepting protein.
  
 
 0.878
amb3654
Hypothetical 1041 kDa protein in hypE 3'region.
  
 
 0.878
amb0324
CheY-like receiver.
  
 
 0.868
amb3501
FOG: CheY-like receiver.
  
 
 0.851
amb0558
Hypothetical protein.
 
 
 0.846
Your Current Organism:
Magnetospirillum magneticum
NCBI taxonomy Id: 342108
Other names: M. magneticum AMB-1, Magnetospirillum magneticum AMB-1, Magnetospirillum magneticum str. AMB-1, Magnetospirillum magneticum strain AMB-1, Magnetospirillum sp. (strain AMB-1), Magnetospirillum sp. AMB-1
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