Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
amb3865Hypothetical protein. (513 aa)    
Predicted Functional Partners:
amb3864
Hypothetical protein.
     0.990
amb3866
Hypothetical protein.
 
     0.951
amb3863
Uncharacterized conserved protein.
 
    0.877
amb4492
Kinesin-like protein K39.
  
    0.777
amb4161
MoxR-like ATPase.
 
     0.688
amb1746
Predicted transcriptional regulator.
  
     0.668
amb4468
Predicted transcriptional regulator.
  
     0.666
amb3562
Predicted transcriptional regulator.
  
     0.665
amb2081
Predicted transcriptional regulator.
  
     0.656
amb2180
Predicted transcriptional regulator.
  
     0.652
Your Current Organism:
Magnetospirillum magneticum
NCBI taxonomy Id: 342108
Other names: M. magneticum AMB-1, Magnetospirillum magneticum AMB-1, Magnetospirillum magneticum str. AMB-1, Magnetospirillum magneticum strain AMB-1, Magnetospirillum sp. (strain AMB-1), Magnetospirillum sp. AMB-1
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