STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
amb3884Aspartate oxidase; Catalyzes the oxidation of L-aspartate to iminoaspartate. (539 aa)    
Predicted Functional Partners:
amb3885
Nicotinate-nucleotide pyrophosphorylase; Belongs to the NadC/ModD family.
  
 0.999
nadA
Quinolinate synthase; Catalyzes the condensation of iminoaspartate with dihydroxyacetone phosphate to form quinolinate.
 0.999
amb2953
Nicotinate-nucleotide pyrophosphorylase; Belongs to the NadC/ModD family.
  
 0.932
purA
Adenylosuccinate synthase; Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP; Belongs to the adenylosuccinate synthetase family.
     
 0.917
argG
Argininosuccinate synthase; Belongs to the argininosuccinate synthase family. Type 1 subfamily.
     
 0.916
pyrB
Aspartate carbamoyltransferase; Catalytic chain; Belongs to the aspartate/ornithine carbamoyltransferase superfamily. ATCase family.
     
 0.904
amb0042
Asparagine synthase.
     
  0.900
amb0105
Asparagine synthase.
     
  0.900
amb0119
Asparagine synthase.
     
  0.900
amb1266
Asparagine synthase.
     
  0.900
Your Current Organism:
Magnetospirillum magneticum
NCBI taxonomy Id: 342108
Other names: M. magneticum AMB-1, Magnetospirillum magneticum AMB-1, Magnetospirillum magneticum str. AMB-1, Magnetospirillum magneticum strain AMB-1, Magnetospirillum sp. (strain AMB-1), Magnetospirillum sp. AMB-1
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