STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
amb3894FOG: GGDEF domain. (558 aa)    
Predicted Functional Partners:
amb3893
Uncharacterized protein conserved in bacteria.
 
     0.938
amb1110
Signal transduction histidine kinase.
  
 
 0.914
amb1281
Predicted signal transduction protein containing a membrane domain; EAL and a GGDEF domain.
 
0.887
amb2930
Sensor protein barA.
  
 
 0.862
amb2980
Hypothetical 918 kDa protein Y4LL.
 
 
0.838
amb1669
Predicted signal transduction protein containing sensor and EAL domains.
 
 
 0.821
amb1432
Signal transduction histidine kinase.
  
 
 0.815
amb1873
Signal transduction histidine kinase.
  
 
 0.791
amb0334
Serine phosphatase RsbU; Regulator of sigma subunit.
  
 
 0.786
amb1414
Predicted signal transduction protein containing a membrane domain; EAL and a GGDEF domain.
 
 
 0.773
Your Current Organism:
Magnetospirillum magneticum
NCBI taxonomy Id: 342108
Other names: M. magneticum AMB-1, Magnetospirillum magneticum AMB-1, Magnetospirillum magneticum str. AMB-1, Magnetospirillum magneticum strain AMB-1, Magnetospirillum sp. (strain AMB-1), Magnetospirillum sp. AMB-1
Server load: low (34%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.