STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
amb3911FOG: TPR repeat. (249 aa)    
Predicted Functional Partners:
amb0303
Periplasmic protease; Belongs to the peptidase S41A family.
    
 
 0.719
amb4535
Zn-dependent protease with chaperone function.
    
 
 0.719
amb2682
Hypothetical protein.
  
     0.667
amb0765
Hypothetical protein.
  
     0.661
amb3910
Nucleoside-diphosphate-sugar epimerase.
       0.646
amb0836
Hypothetical protein.
  
     0.640
amb0319
Hypothetical protein.
  
     0.638
amb2528
Periplasmic protein TonB, links inner and outer membranes.
  
     0.605
amb2845
Hypothetical protein.
  
     0.599
amb3928
Antifreeze glycopeptide polyprotein precursor.
  
     0.564
Your Current Organism:
Magnetospirillum magneticum
NCBI taxonomy Id: 342108
Other names: M. magneticum AMB-1, Magnetospirillum magneticum AMB-1, Magnetospirillum magneticum str. AMB-1, Magnetospirillum magneticum strain AMB-1, Magnetospirillum sp. (strain AMB-1), Magnetospirillum sp. AMB-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.