STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
amb3913Stress-induced morphogen; Activity unknown; Belongs to the BolA/IbaG family. (121 aa)    
Predicted Functional Partners:
amb2117
Glutaredoxin-related protein; Belongs to the glutaredoxin family. Monothiol subfamily.
 
 
 0.907
amb3914
DnaJ-class molecular chaperone.
   
 
 0.715
amb3915
CobS protein.
       0.651
rpoD
DNA-directed RNA polymerase; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth.
      
 0.616
amb3937
DNA-directed RNA polymerase specialized sigma subunit; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
      
 0.616
amb3916
CobT protein.
       0.596
amb3917
Signal transduction histidine kinase.
       0.486
amb3942
Glutathione S-transferase.
 
  
 0.480
rpsP
Ribosomal protein S16; Belongs to the bacterial ribosomal protein bS16 family.
  
    0.443
amb0012
2-polyprenyl-6-methoxyphenol hydroxylase; Related FAD-dependent oxidoreductase.
 
 
   0.425
Your Current Organism:
Magnetospirillum magneticum
NCBI taxonomy Id: 342108
Other names: M. magneticum AMB-1, Magnetospirillum magneticum AMB-1, Magnetospirillum magneticum str. AMB-1, Magnetospirillum magneticum strain AMB-1, Magnetospirillum sp. (strain AMB-1), Magnetospirillum sp. AMB-1
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