STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
amb3948Citrate lyase beta subunit; Belongs to the HpcH/HpaI aldolase family. (292 aa)    
Predicted Functional Partners:
amb0310
MeaA protein.
  
 0.704
amb1422
Acyl-coenzyme A synthetase/AMP-(fatty) acid ligase.
    
 0.688
amb2262
Acyl-coenzyme A synthetase/AMP-(fatty) acid ligase.
    
 0.687
amb1624
Hypothetical protein.
  
  
 0.663
amb0879
Uncharacterized conserved protein.
  
  
 0.609
amb3949
Pyridoxal/pyridoxine/pyridoxamine kinase.
       0.607
amb0816
Predicted acyl-CoA transferase/carnitine dehydratase; Belongs to the CoA-transferase III family.
 
  
 0.593
amb2609
Predicted acyl-CoA transferase/carnitine dehydratase; Belongs to the CoA-transferase III family.
 
  
 0.524
amb1653
Predicted acyl-CoA transferase/carnitine dehydratase; Belongs to the CoA-transferase III family.
 
  
 0.518
amb1990
Pyruvate-flavodoxin oxidoreductase.
 
  
 0.512
Your Current Organism:
Magnetospirillum magneticum
NCBI taxonomy Id: 342108
Other names: M. magneticum AMB-1, Magnetospirillum magneticum AMB-1, Magnetospirillum magneticum str. AMB-1, Magnetospirillum magneticum strain AMB-1, Magnetospirillum sp. (strain AMB-1), Magnetospirillum sp. AMB-1
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