Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
amb3967Permease of the major facilitator superfamily. (376 aa)    
Predicted Functional Partners:
amb3373
Nitrate reductase gamma subunit.
  
  
 0.769
amb0531
Anaerobic dehydrogenase; Typically selenocysteine-containing; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. NasA/NapA/NarB subfamily.
  
  
 0.578
amb3966
Hemerythrin-like protein PA1673.
       0.507
amb4395
Phosphotransferase system, mannose/fructose-specific component IIA.
   
  
 0.433
amb3795
Molybdopterin converting factor, large subunit.
  
  
 0.428
amb2930
Sensor protein barA.
     
 0.427
moaA
Molybdenum cofactor biosynthesis enzyme; Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate.
  
  
 0.422
amb3918
Molybdopterin biosynthesis enzyme.
  
  
 0.420
amb0521
Glutamate synthase [NADPH] large chain precursor.
      
 0.419
amb0285
Hypothetical protein RP006.
   
  
 0.407
Your Current Organism:
Magnetospirillum magneticum
NCBI taxonomy Id: 342108
Other names: M. magneticum AMB-1, Magnetospirillum magneticum AMB-1, Magnetospirillum magneticum str. AMB-1, Magnetospirillum magneticum strain AMB-1, Magnetospirillum sp. (strain AMB-1), Magnetospirillum sp. AMB-1
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