Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| amb2861 | amb3621 | amb2861 | amb3621 | Anthranilate/para-aminobenzoate synthase component II. | Anthranilate phosphoribosyltransferase. | 0.883 |
| amb2861 | trpA | amb2861 | amb4011 | Anthranilate/para-aminobenzoate synthase component II. | Tryptophan synthase alpha chain; The alpha subunit is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. Belongs to the TrpA family. | 0.979 |
| amb2861 | trpB-2 | amb2861 | amb4010 | Anthranilate/para-aminobenzoate synthase component II. | Tryptophan synthase beta chain; The beta subunit is responsible for the synthesis of L- tryptophan from indole and L-serine. | 0.977 |
| amb2861 | trpC | amb2861 | amb2863 | Anthranilate/para-aminobenzoate synthase component II. | Indole-3-glycerol phosphate synthase; Belongs to the TrpC family. | 0.999 |
| amb2861 | trpD | amb2861 | amb2862 | Anthranilate/para-aminobenzoate synthase component II. | Anthranilate phosphoribosyltransferase; Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'- phosphoribosyl)-anthranilate (PRA). | 0.999 |
| amb2861 | trpE | amb2861 | amb1813 | Anthranilate/para-aminobenzoate synthase component II. | Anthranilate/para-aminobenzoate synthase component I; Part of a heterotetrameric complex that catalyzes the two- step biosynthesis of anthranilate, an intermediate in the biosynthesis of L-tryptophan. In the first step, the glutamine-binding beta subunit (TrpG) of anthranilate synthase (AS) provides the glutamine amidotransferase activity which generates ammonia as a substrate that, along with chorismate, is used in the second step, catalyzed by the large alpha subunit of AS (TrpE) to produce anthranilate. In the absence of TrpG, TrpE can synthesize anthranilate directly from chorismat [...] | 0.999 |
| amb2861 | trpF | amb2861 | amb4001 | Anthranilate/para-aminobenzoate synthase component II. | Phosphoribosylanthranilate isomerase; Belongs to the TrpF family. | 0.998 |
| amb3621 | amb2861 | amb3621 | amb2861 | Anthranilate phosphoribosyltransferase. | Anthranilate/para-aminobenzoate synthase component II. | 0.883 |
| amb3621 | trpA | amb3621 | amb4011 | Anthranilate phosphoribosyltransferase. | Tryptophan synthase alpha chain; The alpha subunit is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. Belongs to the TrpA family. | 0.915 |
| amb3621 | trpB-2 | amb3621 | amb4010 | Anthranilate phosphoribosyltransferase. | Tryptophan synthase beta chain; The beta subunit is responsible for the synthesis of L- tryptophan from indole and L-serine. | 0.884 |
| amb3621 | trpC | amb3621 | amb2863 | Anthranilate phosphoribosyltransferase. | Indole-3-glycerol phosphate synthase; Belongs to the TrpC family. | 0.911 |
| amb3621 | trpE | amb3621 | amb1813 | Anthranilate phosphoribosyltransferase. | Anthranilate/para-aminobenzoate synthase component I; Part of a heterotetrameric complex that catalyzes the two- step biosynthesis of anthranilate, an intermediate in the biosynthesis of L-tryptophan. In the first step, the glutamine-binding beta subunit (TrpG) of anthranilate synthase (AS) provides the glutamine amidotransferase activity which generates ammonia as a substrate that, along with chorismate, is used in the second step, catalyzed by the large alpha subunit of AS (TrpE) to produce anthranilate. In the absence of TrpG, TrpE can synthesize anthranilate directly from chorismat [...] | 0.969 |
| amb3621 | trpF | amb3621 | amb4001 | Anthranilate phosphoribosyltransferase. | Phosphoribosylanthranilate isomerase; Belongs to the TrpF family. | 0.891 |
| amb4003 | ihfB | amb4003 | amb4004 | Hypothetical protein. | Bacterial nucleoid DNA-binding protein; This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control. Belongs to the bacterial histone-like protein family. | 0.837 |
| amb4003 | pyrF | amb4003 | amb4002 | Hypothetical protein. | Orotidine-5'-phosphate decarboxylase; Catalyzes the decarboxylation of orotidine 5'-monophosphate (OMP) to uridine 5'-monophosphate (UMP); Belongs to the OMP decarboxylase family. Type 1 subfamily. | 0.826 |
| amb4003 | trpF | amb4003 | amb4001 | Hypothetical protein. | Phosphoribosylanthranilate isomerase; Belongs to the TrpF family. | 0.816 |
| ihfB | amb4003 | amb4004 | amb4003 | Bacterial nucleoid DNA-binding protein; This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control. Belongs to the bacterial histone-like protein family. | Hypothetical protein. | 0.837 |
| ihfB | pyrF | amb4004 | amb4002 | Bacterial nucleoid DNA-binding protein; This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control. Belongs to the bacterial histone-like protein family. | Orotidine-5'-phosphate decarboxylase; Catalyzes the decarboxylation of orotidine 5'-monophosphate (OMP) to uridine 5'-monophosphate (UMP); Belongs to the OMP decarboxylase family. Type 1 subfamily. | 0.849 |
| ihfB | trpA | amb4004 | amb4011 | Bacterial nucleoid DNA-binding protein; This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control. Belongs to the bacterial histone-like protein family. | Tryptophan synthase alpha chain; The alpha subunit is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. Belongs to the TrpA family. | 0.431 |
| ihfB | trpB-2 | amb4004 | amb4010 | Bacterial nucleoid DNA-binding protein; This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control. Belongs to the bacterial histone-like protein family. | Tryptophan synthase beta chain; The beta subunit is responsible for the synthesis of L- tryptophan from indole and L-serine. | 0.414 |
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