amb4015 protein (Magnetospirillum magneticum)

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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white nodes:
second shell of interactors

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a 3D structure is known or predicted

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[Homology]

Score

amb4015

Signal transduction histidine kinase. (658 aa)

Predicted Functional Partners:

amb1110

0.950

amb3654

0.944

amb2293

0.934

amb2931

0.934

amb1432

0.933

amb1841

0.924

amb0650

0.923

amb1112

0.922

amb4146

0.922

amb3438

0.921

Your Current Organism:

Magnetospirillum magneticum

NCBI taxonomy Id: 342108
Other names: M. magneticum AMB-1, Magnetospirillum magneticum AMB-1, Magnetospirillum magneticum str. AMB-1, Magnetospirillum magneticum strain AMB-1, Magnetospirillum sp. (strain AMB-1), Magnetospirillum sp. AMB-1

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
amb0650	amb1110	Predicted periplasmic ligand-binding sensor domain.	Signal transduction histidine kinase.	0.971
amb0650	amb1112	Predicted periplasmic ligand-binding sensor domain.	Signal transduction histidine kinase.	0.959
amb0650	amb1432	Predicted periplasmic ligand-binding sensor domain.	Signal transduction histidine kinase.	0.962
amb0650	amb1841	Predicted periplasmic ligand-binding sensor domain.	Hypothetical protein.	0.960
amb0650	amb2293	Predicted periplasmic ligand-binding sensor domain.	Signal transduction histidine kinase.	0.960
amb0650	amb2931	Predicted periplasmic ligand-binding sensor domain.	Methyl-accepting chemotaxis protein.	0.481
amb0650	amb3438	Predicted periplasmic ligand-binding sensor domain.	Sensor protein gacS.	0.960
amb0650	amb3654	Predicted periplasmic ligand-binding sensor domain.	Hypothetical 1041 kDa protein in hypE 3'region.	0.850
amb0650	amb4015	Predicted periplasmic ligand-binding sensor domain.	Signal transduction histidine kinase.	0.923
amb0650	amb4146	Predicted periplasmic ligand-binding sensor domain.	Signal transduction histidine kinase.	0.960
amb1110	amb0650	Signal transduction histidine kinase.	Predicted periplasmic ligand-binding sensor domain.	0.971
amb1110	amb1112	Signal transduction histidine kinase.	Signal transduction histidine kinase.	0.969
amb1110	amb1432	Signal transduction histidine kinase.	Signal transduction histidine kinase.	0.976
amb1110	amb1841	Signal transduction histidine kinase.	Hypothetical protein.	0.970
amb1110	amb2293	Signal transduction histidine kinase.	Signal transduction histidine kinase.	0.970
amb1110	amb2931	Signal transduction histidine kinase.	Methyl-accepting chemotaxis protein.	0.757
amb1110	amb3438	Signal transduction histidine kinase.	Sensor protein gacS.	0.969
amb1110	amb3654	Signal transduction histidine kinase.	Hypothetical 1041 kDa protein in hypE 3'region.	0.904
amb1110	amb4015	Signal transduction histidine kinase.	Signal transduction histidine kinase.	0.950
amb1110	amb4146	Signal transduction histidine kinase.	Signal transduction histidine kinase.	0.970

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