amb4019 protein (Magnetospirillum magneticum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

amb4019

Predicted methyltransferase; TPR repeat. (540 aa)

Predicted Functional Partners:

amb2240

0.861

amb4535

0.823

amb3138

0.821

amb1708

0.799

amb3878

0.759

amb2610

0.721

amb2156

0.699

mms24

0.672

amb1418

0.669

amb1289

0.666

Your Current Organism:

Magnetospirillum magneticum

NCBI taxonomy Id: 342108
Other names: M. magneticum AMB-1, Magnetospirillum magneticum AMB-1, Magnetospirillum magneticum str. AMB-1, Magnetospirillum magneticum strain AMB-1, Magnetospirillum sp. (strain AMB-1), Magnetospirillum sp. AMB-1

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
amb1289	amb1418	amb1289	amb1418	Flagellar motor protein.	Predicted membrane protein.	0.705
amb1289	amb1708	amb1289	amb1708	Flagellar motor protein.	Trypsin-like serine protease; Typically periplasmic, contain C-terminal PDZ domain.	0.497
amb1289	amb3878	amb1289	amb3878	Flagellar motor protein.	Sensor protein gacS.	0.415
amb1289	amb4019	amb1289	amb4019	Flagellar motor protein.	Predicted methyltransferase; TPR repeat.	0.666
amb1418	amb1289	amb1418	amb1289	Predicted membrane protein.	Flagellar motor protein.	0.705
amb1418	amb1708	amb1418	amb1708	Predicted membrane protein.	Trypsin-like serine protease; Typically periplasmic, contain C-terminal PDZ domain.	0.697
amb1418	amb2156	amb1418	amb2156	Predicted membrane protein.	Hypothetical protein.	0.535
amb1418	amb2240	amb1418	amb2240	Predicted membrane protein.	TPR repeat; SEL1 subfamily.	0.749
amb1418	amb3138	amb1418	amb3138	Predicted membrane protein.	Trypsin-like serine protease; Typically periplasmic, contain C-terminal PDZ domain.	0.472
amb1418	amb4019	amb1418	amb4019	Predicted membrane protein.	Predicted methyltransferase; TPR repeat.	0.669
amb1418	mms24	amb1418	amb0971	Predicted membrane protein.	TPR repeat; Probably forms a large homooligomer on which other magnetosome subunits assemble (Probable). Required for formation of functional magnetosomes from pre-existing vesicles, it has a dynamic location in the cell.	0.534
amb1708	amb1289	amb1708	amb1289	Trypsin-like serine protease; Typically periplasmic, contain C-terminal PDZ domain.	Flagellar motor protein.	0.497
amb1708	amb1418	amb1708	amb1418	Trypsin-like serine protease; Typically periplasmic, contain C-terminal PDZ domain.	Predicted membrane protein.	0.697
amb1708	amb2240	amb1708	amb2240	Trypsin-like serine protease; Typically periplasmic, contain C-terminal PDZ domain.	TPR repeat; SEL1 subfamily.	0.602
amb1708	amb3138	amb1708	amb3138	Trypsin-like serine protease; Typically periplasmic, contain C-terminal PDZ domain.	Trypsin-like serine protease; Typically periplasmic, contain C-terminal PDZ domain.	0.884
amb1708	amb3878	amb1708	amb3878	Trypsin-like serine protease; Typically periplasmic, contain C-terminal PDZ domain.	Sensor protein gacS.	0.782
amb1708	amb4019	amb1708	amb4019	Trypsin-like serine protease; Typically periplasmic, contain C-terminal PDZ domain.	Predicted methyltransferase; TPR repeat.	0.799
amb1708	amb4535	amb1708	amb4535	Trypsin-like serine protease; Typically periplasmic, contain C-terminal PDZ domain.	Zn-dependent protease with chaperone function.	0.738
amb2156	amb1418	amb2156	amb1418	Hypothetical protein.	Predicted membrane protein.	0.535
amb2156	amb2240	amb2156	amb2240	Hypothetical protein.	TPR repeat; SEL1 subfamily.	0.468

page 1 of 4

Server load: low (22%) [HD]

Permalink

Network

Neighborhood

Experiments

Co-occurrence

Databases

Co-expression

Textmining

Fusion

© STRING Consortium 2026

Credits

Access

Info

About