Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
amb4100FOG: CheY-like receiver. (123 aa)    
Predicted Functional Partners:
amb3048
Signal transduction histidine kinase.
 
 
 0.977
amb3570
FOG: CheY-like receiver.
  
 
0.916
amb0918
CheY-like receiver.
  
 
0.913
amb1968
Signal transduction histidine kinase.
 
 
 0.795
amb2850
Signal transduction histidine kinase.
 
 
 
 0.786
amb3235
FOG: CheY-like receiver.
  
   0.785
amb3096
Signal transduction histidine kinase.
 
 
 
 0.783
amb0567
Signal transduction histidine kinase.
 
 
 
 0.779
amb2293
Signal transduction histidine kinase.
 
 
 0.772
amb2546
Signal transduction histidine kinase.
  
 
   0.770
Your Current Organism:
Magnetospirillum magneticum
NCBI taxonomy Id: 342108
Other names: M. magneticum AMB-1, Magnetospirillum magneticum AMB-1, Magnetospirillum magneticum str. AMB-1, Magnetospirillum magneticum strain AMB-1, Magnetospirillum sp. (strain AMB-1), Magnetospirillum sp. AMB-1
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