STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
amb4154Hypothetical 918 kDa protein Y4LL. (833 aa)    
Predicted Functional Partners:
amb2930
Sensor protein barA.
  
 
 0.871
amb1106
EAL domain.
 
 
 0.864
amb1918
Predicted signal transduction protein containing a membrane domain; EAL and a GGDEF domain.
 
 
0.829
amb1281
Predicted signal transduction protein containing a membrane domain; EAL and a GGDEF domain.
 
 
0.822
amb4321
Predicted signal transduction protein containing a membrane domain; EAL and a GGDEF domain.
 
 
0.821
amb4152
FOG: CheY-like receiver.
  
  
 0.812
amb1110
Signal transduction histidine kinase.
  
 
 0.809
amb0729
Predicted signal transduction protein; Containing a membrane domain.
 
 
0.806
amb2928
Bacteriophytochrome; Light-regulated signal transduction histidine kinase.
    
 0.797
amb1873
Signal transduction histidine kinase.
  
 
 0.784
Your Current Organism:
Magnetospirillum magneticum
NCBI taxonomy Id: 342108
Other names: M. magneticum AMB-1, Magnetospirillum magneticum AMB-1, Magnetospirillum magneticum str. AMB-1, Magnetospirillum magneticum strain AMB-1, Magnetospirillum sp. (strain AMB-1), Magnetospirillum sp. AMB-1
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