Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| amb0017 | amb0421 | amb0017 | amb0421 | Outer membrane lipoprotein-sorting protein; Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane). | Inactivated superfamily I helicase. | 0.800 |
| amb0017 | amb3674 | amb0017 | amb3674 | Outer membrane lipoprotein-sorting protein; Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane). | DNA polymerase III, chi subunit. | 0.601 |
| amb0017 | amb4162 | amb0017 | amb4162 | Outer membrane lipoprotein-sorting protein; Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane). | ATP-dependent exoDNAse beta subunit; Helicase and exonuclease domains; Belongs to the helicase family. UvrD subfamily. | 0.695 |
| amb0017 | amb4264 | amb0017 | amb4264 | Outer membrane lipoprotein-sorting protein; Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane). | Uncharacterized protein conserved in bacteria. | 0.525 |
| amb0017 | lptD | amb0017 | amb3715 | Outer membrane lipoprotein-sorting protein; Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane). | Organic solvent tolerance protein OstA; Involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane; Belongs to the LptD family. | 0.723 |
| amb0273 | amb0421 | amb0273 | amb0421 | Signal transduction histidine kinase. | Inactivated superfamily I helicase. | 0.471 |
| amb0273 | amb4162 | amb0273 | amb4162 | Signal transduction histidine kinase. | ATP-dependent exoDNAse beta subunit; Helicase and exonuclease domains; Belongs to the helicase family. UvrD subfamily. | 0.655 |
| amb0421 | amb0017 | amb0421 | amb0017 | Inactivated superfamily I helicase. | Outer membrane lipoprotein-sorting protein; Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane). | 0.800 |
| amb0421 | amb0273 | amb0421 | amb0273 | Inactivated superfamily I helicase. | Signal transduction histidine kinase. | 0.471 |
| amb0421 | amb2261 | amb0421 | amb2261 | Inactivated superfamily I helicase. | Recombinational DNA repair protein; RecF pathway. | 0.491 |
| amb0421 | amb3674 | amb0421 | amb3674 | Inactivated superfamily I helicase. | DNA polymerase III, chi subunit. | 0.575 |
| amb0421 | amb4162 | amb0421 | amb4162 | Inactivated superfamily I helicase. | ATP-dependent exoDNAse beta subunit; Helicase and exonuclease domains; Belongs to the helicase family. UvrD subfamily. | 0.945 |
| amb0421 | amb4264 | amb0421 | amb4264 | Inactivated superfamily I helicase. | Uncharacterized protein conserved in bacteria. | 0.641 |
| amb0421 | lptD | amb0421 | amb3715 | Inactivated superfamily I helicase. | Organic solvent tolerance protein OstA; Involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane; Belongs to the LptD family. | 0.661 |
| amb2261 | amb0421 | amb2261 | amb0421 | Recombinational DNA repair protein; RecF pathway. | Inactivated superfamily I helicase. | 0.491 |
| amb2261 | amb3674 | amb2261 | amb3674 | Recombinational DNA repair protein; RecF pathway. | DNA polymerase III, chi subunit. | 0.538 |
| amb2261 | amb4162 | amb2261 | amb4162 | Recombinational DNA repair protein; RecF pathway. | ATP-dependent exoDNAse beta subunit; Helicase and exonuclease domains; Belongs to the helicase family. UvrD subfamily. | 0.780 |
| amb2261 | recF | amb2261 | amb0638 | Recombinational DNA repair protein; RecF pathway. | Recombinational DNA repair ATPase; The RecF protein is involved in DNA metabolism; it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP; Belongs to the RecF family. | 0.728 |
| amb3674 | amb0017 | amb3674 | amb0017 | DNA polymerase III, chi subunit. | Outer membrane lipoprotein-sorting protein; Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane). | 0.601 |
| amb3674 | amb0421 | amb3674 | amb0421 | DNA polymerase III, chi subunit. | Inactivated superfamily I helicase. | 0.575 |
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