STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
amb4167Prephenate dehydratase. (289 aa)    
Predicted Functional Partners:
amb0555
Aspartate aminotransferase A; EC 2611.
 
 
 0.990
kdsB
CMP-2-keto-3-deoxyoctulosonic acid synthetase; Activates KDO (a required 8-carbon sugar) for incorporation into bacterial lipopolysaccharide in Gram-negative bacteria.
      0.982
amb3975
Protein tyrC; Cyclohexadienyl dehydrogenase.
 
 0.974
amb3973
Chorismate mutase.
  
 
 0.945
hisC
Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase; Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily.
  
 
 0.920
amb0130
Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase.
  
 
 0.919
amb2299
7, 8-dihydro-6-hydroxymethylpterin-pyrophosphokinase.
      0.905
kdsA
3-deoxy-D-manno-octulosonic acid 8-phosphate synthase; Belongs to the KdsA family.
 
 
  
 0.902
amb2852
Glutamate decarboxylase and related PLP-dependent protein.
    
 0.840
amb3194
Phosphoserine aminotransferase.
  
  
 0.763
Your Current Organism:
Magnetospirillum magneticum
NCBI taxonomy Id: 342108
Other names: M. magneticum AMB-1, Magnetospirillum magneticum AMB-1, Magnetospirillum magneticum str. AMB-1, Magnetospirillum magneticum strain AMB-1, Magnetospirillum sp. (strain AMB-1), Magnetospirillum sp. AMB-1
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