Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
amb4207Predicted periplasmic or secreted lipoprotein. (198 aa)    
Predicted Functional Partners:
amb4205
Glycosyltransferase involved in cell wall biogenesis.
  
    0.786
mpsA
Acetyl-CoA carboxylase alpha subunit; Component of the acetyl coenzyme A carboxylase (ACC) complex. First, biotin carboxylase catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the carboxyltransferase to acetyl-CoA to form malonyl-CoA.
     
 0.773
amb4206
Uncharacterized conserved protein.
       0.773
amb4504
Predicted periplasmic or secreted lipoprotein.
  
     0.645
amb4208
Uncharacterized conserved protein.
       0.592
amb4201
Thiol-disulfide isomerase and thioredoxins.
       0.572
amb4202
Cytochrome c-type biogenesis protein cycL precursor; Possible subunit of a heme lyase.
       0.572
amb4203
Cytochrome c-type biogenesis protein cycH.
       0.572
amb0025
Hypothetical PE-PGRS family protein Rv1325c/MT1367 precursor; Msp1.
  
     0.560
amb4200
Cytochrome c biogenesis factor.
       0.550
Your Current Organism:
Magnetospirillum magneticum
NCBI taxonomy Id: 342108
Other names: M. magneticum AMB-1, Magnetospirillum magneticum AMB-1, Magnetospirillum magneticum str. AMB-1, Magnetospirillum magneticum strain AMB-1, Magnetospirillum sp. (strain AMB-1), Magnetospirillum sp. AMB-1
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