Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
amb4227HD-GYP domain. (431 aa)    
Predicted Functional Partners:
amb3451
Response regulator containing a CheY-like receiver domain and a GGDEF domain.
 
 
 0.536
amb4228
Hypothetical protein.
       0.529
amb3568
FOG: GGDEF domain.
 
   0.523
amb3261
FOG: GGDEF domain.
 
   
 0.504
amb1945
Response regulator; Containing a CheY-like receiver domain and a GGDEF domain.
   0.494
amb3699
FOG: GGDEF domain.
 
   
 0.491
amb4000
Response regulator containing a CheY-like receiver domain and a GGDEF domain.
 
   0.489
amb1345
Response regulator; Containing a CheY-like receiver domain and a GGDEF domain.
 
   0.486
amb0759
GGDEF domain.
 
   0.463
amb4415
FOG: GGDEF domain.
 
 
 0.451
Your Current Organism:
Magnetospirillum magneticum
NCBI taxonomy Id: 342108
Other names: M. magneticum AMB-1, Magnetospirillum magneticum AMB-1, Magnetospirillum magneticum str. AMB-1, Magnetospirillum magneticum strain AMB-1, Magnetospirillum sp. (strain AMB-1), Magnetospirillum sp. AMB-1
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