Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
amb4236Uncharacterized flavoprotein. (252 aa)    
Predicted Functional Partners:
amb4237
Methyl-accepting chemotaxis protein.
       0.727
amb2698
Coproporphyrinogen III oxidase and related Fe-S oxidoreductase; Belongs to the anaerobic coproporphyrinogen-III oxidase family.
   
  
 0.608
amb1682
Hypothetical protein.
 
  
 0.546
amb4238
Hypothetical protein.
       0.511
amb0737
Hemerythrin-like protein RSc0777.
  
    0.505
amb3095
Hypothetical protein.
  
  
 0.453
amb3576
Hypothetical protein.
   
    0.446
amb0569
Hemerythrin-like protein RSc0777.
   
    0.434
amb1415
Hemerythrin-like protein PA1673.
   
    0.434
amb3966
Hemerythrin-like protein PA1673.
   
    0.434
Your Current Organism:
Magnetospirillum magneticum
NCBI taxonomy Id: 342108
Other names: M. magneticum AMB-1, Magnetospirillum magneticum AMB-1, Magnetospirillum magneticum str. AMB-1, Magnetospirillum magneticum strain AMB-1, Magnetospirillum sp. (strain AMB-1), Magnetospirillum sp. AMB-1
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