STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
amb4245Superfamily II DNA and RNA helicase. (808 aa)    
Predicted Functional Partners:
lysS
Lysyl-tRNA synthetase; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
     0.591
amb3105
Chaperone required for the assembly of the mitochondrial F1-ATPase.
  
     0.580
amb4318
Transcriptional regulator; Similar to M xanthus CarD.
 
     0.579
amb3916
CobT protein.
  
     0.562
cbiA
Cobyrinic acid a,c-diamide synthase; Catalyzes the ATP-dependent amidation of the two carboxylate groups at positions a and c of cobyrinate, using either L-glutamine or ammonia as the nitrogen source; Belongs to the CobB/CbiA family.
   
    0.554
amb2177
N-formylglutamate amidohydrolase.
  
     0.545
amb2523
Sec-independent protein secretion pathway components.
 
     0.521
amb4244
Predicted transcriptional regulator.
  
     0.469
amb4072
Predicted nucleic-acid-binding protein implicated in transcription termination.
  
     0.423
amb3915
CobS protein.
  
     0.416
Your Current Organism:
Magnetospirillum magneticum
NCBI taxonomy Id: 342108
Other names: M. magneticum AMB-1, Magnetospirillum magneticum AMB-1, Magnetospirillum magneticum str. AMB-1, Magnetospirillum magneticum strain AMB-1, Magnetospirillum sp. (strain AMB-1), Magnetospirillum sp. AMB-1
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