Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
amb4246Transcriptional regulator. (140 aa)    
Predicted Functional Partners:
amb2528
Periplasmic protein TonB, links inner and outer membranes.
  
    0.652
amb4539
Predicted transcriptional regulator.
  
 
 
 0.613
amb0765
Hypothetical protein.
  
     0.612
amb3472
Uncharacterized protein conserved in bacteria.
  
     0.482
xerC
Integrase; Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The XerC- XerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell division. It also contributes to the segregational stability of plasmids.
  
    0.477
amb4247
N-acetyl-alpha-D-muramate 1-phosphate uridylyltransferase; eIF-2Bgamma/eIF-2Bepsilon.
       0.476
amb4248
Predicted phosphotransferase related to Ser/Thr protein kinase.
       0.476
amb4249
Predicted ATPase or kinase.
       0.476
amb1127
Predicted ATPase.
  
     0.471
thrB
Homoserine kinase; Belongs to the pseudomonas-type ThrB family.
  
    0.469
Your Current Organism:
Magnetospirillum magneticum
NCBI taxonomy Id: 342108
Other names: M. magneticum AMB-1, Magnetospirillum magneticum AMB-1, Magnetospirillum magneticum str. AMB-1, Magnetospirillum magneticum strain AMB-1, Magnetospirillum sp. (strain AMB-1), Magnetospirillum sp. AMB-1
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