STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
amb4306Fe2+/Zn2+ uptake regulation protein; Belongs to the Fur family. (275 aa)    
Predicted Functional Partners:
amb4307
Hypothetical protein; ISmag1,partial; similar to IS5 family.
       0.773
amb3051
Transcriptional regulator.
  
  
 0.638
amb2309
Fe2+/Zn2+ uptake regulation protein; Belongs to the Fur family.
      
 0.616
amb0664
Peroxiredoxin; Msp3.
  
  
 0.529
rpoA
DNA-directed RNA polymerase, alpha subunit/40 kD subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 
 0.522
amb0521
Glutamate synthase [NADPH] large chain precursor.
     
 0.498
znuC
ABC-type Mn/Zn transport systems, ATPase component; Part of the ABC transporter complex ZnuABC involved in zinc import. Responsible for energy coupling to the transport system. Belongs to the ABC transporter superfamily. Zinc importer (TC 3.A.1.15.5) family.
  
  
 0.469
amb3430
Putative rubrerythrin.
 
  
 0.468
amb1838
Rubrerythrin.
  
  
 0.453
amb2851
Protein yccU.
  
    0.451
Your Current Organism:
Magnetospirillum magneticum
NCBI taxonomy Id: 342108
Other names: M. magneticum AMB-1, Magnetospirillum magneticum AMB-1, Magnetospirillum magneticum str. AMB-1, Magnetospirillum magneticum strain AMB-1, Magnetospirillum sp. (strain AMB-1), Magnetospirillum sp. AMB-1
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.