Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
amb4317Hypothetical protein. (277 aa)    
Predicted Functional Partners:
amb1418
Predicted membrane protein.
  
 0.818
amb1148
Hypothetical protein.
   
 0.793
amb4316
Hypothetical protein.
       0.773
amb1261
Hypothetical protein.
    
 0.738
amb2818
Suppressor protein SRP40.
    
 0.738
amb0906
Superfamily II DNA/RNA helicase.
    
 0.735
amb1121
Magnetic particle membrane specific GTPase P16.
  
     0.726
amb3041
Uncharacterized protein conserved in bacteria.
  
     0.711
amb3515
Hypothetical protein.
  
     0.702
amb4318
Transcriptional regulator; Similar to M xanthus CarD.
       0.687
Your Current Organism:
Magnetospirillum magneticum
NCBI taxonomy Id: 342108
Other names: M. magneticum AMB-1, Magnetospirillum magneticum AMB-1, Magnetospirillum magneticum str. AMB-1, Magnetospirillum magneticum strain AMB-1, Magnetospirillum sp. (strain AMB-1), Magnetospirillum sp. AMB-1
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