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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
amb4327Lysophospholipase L1 and related esterase. (371 aa)    
Predicted Functional Partners:
amb4329
2'-5' RNA ligase; Hydrolyzes RNA 2',3'-cyclic phosphodiester to an RNA 2'- phosphomonoester; Belongs to the 2H phosphoesterase superfamily. ThpR family.
      0.915
amb4325
Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, permease component.
 
     0.892
amb4326
ABC-type antimicrobial peptide transport system, permease component.
 
     0.892
amb4328
Uncharacterized protein conserved in bacteria.
       0.832
amb1949
Phenolpthiocerol synthesis polyketide synthase ppsA.
  
  
 0.680
amb4324
Integral membrane protein, interacts with FtsH; Belongs to the BI1 family.
       0.475
amb2088
Dehydrogenase with different specificities; Related to short-chain alcohol dehydrogenase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
  
 0.446
amb0300
Putative Zn-dependent protease.
  
     0.444
amb1139
Autotransporter adhesin.
  
 
 0.410
amb1998
Hypothetical protein.
  
 
 0.410
Your Current Organism:
Magnetospirillum magneticum
NCBI taxonomy Id: 342108
Other names: M. magneticum AMB-1, Magnetospirillum magneticum AMB-1, Magnetospirillum magneticum str. AMB-1, Magnetospirillum magneticum strain AMB-1, Magnetospirillum sp. (strain AMB-1), Magnetospirillum sp. AMB-1
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