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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
amb4342Hypothetical protein. (158 aa)    
Predicted Functional Partners:
rpsU
Ribosomal protein S21; Belongs to the bacterial ribosomal protein bS21 family.
   
 
 0.844
rpmA
Ribosomal protein L27; Belongs to the bacterial ribosomal protein bL27 family.
   
 
 0.831
rpsI
Ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family.
   
 
 0.830
rpmH
Ribosomal protein L34; Belongs to the bacterial ribosomal protein bL34 family.
   
 
 0.828
rplI
Ribosomal protein L9; Binds to the 23S rRNA.
  
   0.821
rpmC
Ribosomal protein L29; Belongs to the universal ribosomal protein uL29 family.
    
 
 0.820
rpsP
Ribosomal protein S16; Belongs to the bacterial ribosomal protein bS16 family.
    
 
 0.817
rplO
Ribosomal protein L15; Binds to the 23S rRNA; Belongs to the universal ribosomal protein uL15 family.
   
 
 0.816
rpsE
Ribosomal protein S5; With S4 and S12 plays an important role in translational accuracy; Belongs to the universal ribosomal protein uS5 family.
    
 
 0.816
rpsD
Ribosomal protein S4 and related protein; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit.
  
 
 0.814
Your Current Organism:
Magnetospirillum magneticum
NCBI taxonomy Id: 342108
Other names: M. magneticum AMB-1, Magnetospirillum magneticum AMB-1, Magnetospirillum magneticum str. AMB-1, Magnetospirillum magneticum strain AMB-1, Magnetospirillum sp. (strain AMB-1), Magnetospirillum sp. AMB-1
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