Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| amb1949 | amb4349 | amb1949 | amb4349 | Phenolpthiocerol synthesis polyketide synthase ppsA. | Permease of the major facilitator superfamily. | 0.410 |
| amb1949 | rplY | amb1949 | amb4348 | Phenolpthiocerol synthesis polyketide synthase ppsA. | Ribosomal protein L25; This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance. Belongs to the bacterial ribosomal protein bL25 family. CTC subfamily. | 0.454 |
| amb4349 | amb1949 | amb4349 | amb1949 | Permease of the major facilitator superfamily. | Phenolpthiocerol synthesis polyketide synthase ppsA. | 0.410 |
| amb4349 | amb4350 | amb4349 | amb4350 | Permease of the major facilitator superfamily. | Predicted hydrolase of HD superfamily. | 0.773 |
| amb4349 | pth | amb4349 | amb4347 | Permease of the major facilitator superfamily. | Peptidyl-tRNA hydrolase; The natural substrate for this enzyme may be peptidyl-tRNAs which drop off the ribosome during protein synthesis. Belongs to the PTH family. | 0.502 |
| amb4349 | rplY | amb4349 | amb4348 | Permease of the major facilitator superfamily. | Ribosomal protein L25; This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance. Belongs to the bacterial ribosomal protein bL25 family. CTC subfamily. | 0.523 |
| amb4349 | ychF | amb4349 | amb4346 | Permease of the major facilitator superfamily. | Predicted GTPase, probable translation factor; ATPase that binds to both the 70S ribosome and the 50S ribosomal subunit in a nucleotide-independent manner. | 0.527 |
| amb4350 | amb4349 | amb4350 | amb4349 | Predicted hydrolase of HD superfamily. | Permease of the major facilitator superfamily. | 0.773 |
| amb4350 | pth | amb4350 | amb4347 | Predicted hydrolase of HD superfamily. | Peptidyl-tRNA hydrolase; The natural substrate for this enzyme may be peptidyl-tRNAs which drop off the ribosome during protein synthesis. Belongs to the PTH family. | 0.502 |
| amb4350 | rplY | amb4350 | amb4348 | Predicted hydrolase of HD superfamily. | Ribosomal protein L25; This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance. Belongs to the bacterial ribosomal protein bL25 family. CTC subfamily. | 0.511 |
| amb4350 | ychF | amb4350 | amb4346 | Predicted hydrolase of HD superfamily. | Predicted GTPase, probable translation factor; ATPase that binds to both the 70S ribosome and the 50S ribosomal subunit in a nucleotide-independent manner. | 0.516 |
| pth | amb4349 | amb4347 | amb4349 | Peptidyl-tRNA hydrolase; The natural substrate for this enzyme may be peptidyl-tRNAs which drop off the ribosome during protein synthesis. Belongs to the PTH family. | Permease of the major facilitator superfamily. | 0.502 |
| pth | amb4350 | amb4347 | amb4350 | Peptidyl-tRNA hydrolase; The natural substrate for this enzyme may be peptidyl-tRNAs which drop off the ribosome during protein synthesis. Belongs to the PTH family. | Predicted hydrolase of HD superfamily. | 0.502 |
| pth | rplY | amb4347 | amb4348 | Peptidyl-tRNA hydrolase; The natural substrate for this enzyme may be peptidyl-tRNAs which drop off the ribosome during protein synthesis. Belongs to the PTH family. | Ribosomal protein L25; This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance. Belongs to the bacterial ribosomal protein bL25 family. CTC subfamily. | 0.949 |
| pth | ychF | amb4347 | amb4346 | Peptidyl-tRNA hydrolase; The natural substrate for this enzyme may be peptidyl-tRNAs which drop off the ribosome during protein synthesis. Belongs to the PTH family. | Predicted GTPase, probable translation factor; ATPase that binds to both the 70S ribosome and the 50S ribosomal subunit in a nucleotide-independent manner. | 0.988 |
| rplY | amb1949 | amb4348 | amb1949 | Ribosomal protein L25; This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance. Belongs to the bacterial ribosomal protein bL25 family. CTC subfamily. | Phenolpthiocerol synthesis polyketide synthase ppsA. | 0.454 |
| rplY | amb4349 | amb4348 | amb4349 | Ribosomal protein L25; This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance. Belongs to the bacterial ribosomal protein bL25 family. CTC subfamily. | Permease of the major facilitator superfamily. | 0.523 |
| rplY | amb4350 | amb4348 | amb4350 | Ribosomal protein L25; This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance. Belongs to the bacterial ribosomal protein bL25 family. CTC subfamily. | Predicted hydrolase of HD superfamily. | 0.511 |
| rplY | pth | amb4348 | amb4347 | Ribosomal protein L25; This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance. Belongs to the bacterial ribosomal protein bL25 family. CTC subfamily. | Peptidyl-tRNA hydrolase; The natural substrate for this enzyme may be peptidyl-tRNAs which drop off the ribosome during protein synthesis. Belongs to the PTH family. | 0.949 |
| rplY | ychF | amb4348 | amb4346 | Ribosomal protein L25; This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance. Belongs to the bacterial ribosomal protein bL25 family. CTC subfamily. | Predicted GTPase, probable translation factor; ATPase that binds to both the 70S ribosome and the 50S ribosomal subunit in a nucleotide-independent manner. | 0.871 |
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