Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
amb4373Predicted membrane protein. (231 aa)    
Predicted Functional Partners:
amb2334
Uncharacterized protein involved in response to NO.
 
     0.769
amb3505
Uncharacterized protein involved in response to NO.
 
     0.730
amb2944
Nitric oxide reductase large subunit; Belongs to the heme-copper respiratory oxidase family.
 
    0.724
amb2945
Cytochrome c, mono- and diheme variants.
 
    0.668
amb2942
Nitric oxide reductase activation protein.
 
    0.665
folD
5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase; Catalyzes the oxidation of 5,10-methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10- methenyltetrahydrofolate to 10-formyltetrahydrofolate.
     
 0.636
amb4375
Uncharacterized conserved protein; Belongs to the UPF0235 family.
       0.623
amb4376
Predicted integral membrane protein.
  
    0.619
amb4372
Predicted Zn-dependent protease and their inactivated homolog.
       0.588
amb2943
Denitrification regulatory protein nirQ.
 
     0.454
Your Current Organism:
Magnetospirillum magneticum
NCBI taxonomy Id: 342108
Other names: M. magneticum AMB-1, Magnetospirillum magneticum AMB-1, Magnetospirillum magneticum str. AMB-1, Magnetospirillum magneticum strain AMB-1, Magnetospirillum sp. (strain AMB-1), Magnetospirillum sp. AMB-1
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