STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
amb4388ABC-type uncharacterized transport system, permease component. (367 aa)    
Predicted Functional Partners:
amb4387
ABC-type uncharacterized transport system, permease component.
  
 0.986
amb4389
ABC-type oligopeptide transport system, periplasmic component.
  
 0.983
amb4386
ABC-type uncharacterized transport system, duplicated ATPase component; Belongs to the ABC transporter superfamily.
  
 0.972
amb1977
ABC-type dipeptide/oligopeptide/nickel transport systems; Permease components.
     0.854
amb4390
Hypothetical protein.
       0.779
amb4385
Permease of the drug/metabolite transporter superfamily.
       0.773
ahcY
S-adenosylhomocysteine hydrolase; May play a key role in the regulation of the intracellular concentration of adenosylhomocysteine.
       0.568
amb1979
ABC-type dipeptide transport system; Periplasmic component.
 
   
 0.478
rplT
Ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.
       0.426
rpmI
Ribosomal protein L35; Belongs to the bacterial ribosomal protein bL35 family.
       0.426
Your Current Organism:
Magnetospirillum magneticum
NCBI taxonomy Id: 342108
Other names: M. magneticum AMB-1, Magnetospirillum magneticum AMB-1, Magnetospirillum magneticum str. AMB-1, Magnetospirillum magneticum strain AMB-1, Magnetospirillum sp. (strain AMB-1), Magnetospirillum sp. AMB-1
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