STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
amb4404Universal stress protein UspA and related nucleotide-binding protein. (155 aa)    
Predicted Functional Partners:
amb4405
Hypothetical protein.
 
     0.950
amb4406
Predicted permease.
 
   
 0.939
amb3553
Predicted permease.
 
   
 0.793
amb4185
Uncharacterized protein involved in cysteine biosynthesis.
  
   
 0.637
amb4252
Uncharacterized protein conserved in bacteria.
  
     0.622
amb4403
HIRA-interacting protein 5.
     
 0.620
amb1533
Disulfide bond formation protein DsbB.
  
     0.601
amb4151
Hypothetical protein.
  
     0.573
amb4408
Tryptophanyl-tRNA synthetase; Belongs to the class-I aminoacyl-tRNA synthetase family.
     
 0.525
amb2350
CBP3 protein, mitochondrial precursor.
  
     0.501
Your Current Organism:
Magnetospirillum magneticum
NCBI taxonomy Id: 342108
Other names: M. magneticum AMB-1, Magnetospirillum magneticum AMB-1, Magnetospirillum magneticum str. AMB-1, Magnetospirillum magneticum strain AMB-1, Magnetospirillum sp. (strain AMB-1), Magnetospirillum sp. AMB-1
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