STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
amb4407Uncharacterized protein conserved in bacteria. (326 aa)    
Predicted Functional Partners:
amb4408
Tryptophanyl-tRNA synthetase; Belongs to the class-I aminoacyl-tRNA synthetase family.
       0.793
amb4317
Hypothetical protein.
  
     0.640
amb2845
Hypothetical protein.
  
     0.600
amb0025
Hypothetical PE-PGRS family protein Rv1325c/MT1367 precursor; Msp1.
  
     0.544
amb2893
Periplasmic protein TonB, links inner and outer membranes.
  
     0.540
amb4405
Hypothetical protein.
       0.523
amb3515
Hypothetical protein.
  
     0.519
amb4397
Serine kinase of the HPr protein, regulates carbohydrate metabolism.
  
     0.484
murJ
Uncharacterized membrane protein, putative virulence factor; Involved in peptidoglycan biosynthesis. Transports lipid- linked peptidoglycan precursors from the inner to the outer leaflet of the cytoplasmic membrane.
       0.470
amb4481
Hypothetical protein.
  
     0.465
Your Current Organism:
Magnetospirillum magneticum
NCBI taxonomy Id: 342108
Other names: M. magneticum AMB-1, Magnetospirillum magneticum AMB-1, Magnetospirillum magneticum str. AMB-1, Magnetospirillum magneticum strain AMB-1, Magnetospirillum sp. (strain AMB-1), Magnetospirillum sp. AMB-1
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